A primer on biomedical ontology matching

A gentle, interactive introduction to what OAEI Bio-ML asks systems to do — with hands-on toy examples for all three tasks — is on the way.

Coming soon

This primer is being prepared

We're building an interactive walkthrough that lets you try each OAEI Bio-ML task by hand on toy biomedical examples — proposing a small equivalence alignment, ranking a candidate pool, and exploring typed (equivalence + subsumption) ranking. It will land here shortly.

In the meantime, you can dive straight into the details:

The three tasks — what each competition asks you to submit.
Quickstart — download the data, run the scoring kit, and submit.
Evaluation metrics — how submissions are scored.